prof. RNDr. Jiří Šponer, DrSc.

2013

• Structural and energetic factors controlling the enantioselectivity of dinucleotide formation under prebiotic conditions

  ŠPONEROVÁ Judit MLÁDEK Arnošt ŠPONER Jiří

  Article in Periodical

  Physical Chemistry Chemical Physics, year: 2013, volume: 15, edition: 17, DOI

• Structural dynamics of possible late-stage intermediates in folding of quadruplex DNA studied by molecular simulations

  STADLBAUER Petr KREPL Miroslav CHEATHAM Thomas E. KOČA Jaroslav ŠPONER Jiří

  Article in Periodical

  Nucleic Acids Research, year: 2013, volume: 41, edition: 14, DOI

• Structure, Stiffness and Substates of the Dickerson-Drew Dodecamer

  DRŠATA Tomáš PEREZ Alberto OROZCO Modesto MOROZOV Alexandre V ŠPONER Jiří LANKAŠ Filip

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2013, volume: 9, edition: 1, DOI

• Theoretical studies of the mechanism of 2-aminooxazole formation under prebiotically plausible conditions

  SZABLA Rafal Kazimierz ŠPONEROVÁ Judit ŠPONER Jiří GORA Robert W.

  Article in Periodical

  Physical Chemistry Chemical Physics, year: 2013, volume: 15, edition: 20, DOI

• Toward Improved Description of DNA Backbone: Revisiting Epsilon and Zeta Torsion Force Field Parameters

  ZGARBOVA Marie LUQUE Javier F. ŠPONER Jiří CHEATHAM Thomas E III OTYEPKA Michal JUREČKA Petr

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2013, volume: 9, edition: 5, DOI

2012

• A Novel Approach for Deriving Force Field Torsion Angle Parameters Accounting for Conformation-Dependent Solvation Effects

  ZGARBOVÁ Marie JAVIER LUQUE F. ŠPONER Jiří OTYEPKA Michal JUREČKA Petr

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2012, volume: 8, edition: 9, DOI

• Can We Accurately Describe the Structure of Adenine Tracts in B-DNA? Reference Quantum-Chemical Computations Reveal Overstabilization of Stacking by Molecular Mechanics

  BANÁŠ Pavel MLÁDEK Arnošt OTYEPKA Michal ZGARBOVA Marie JURECKA Petr SVOZIL Daniel LANKAŠ Filip ŠPONER Jiří

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2012, volume: 8, edition: 7, DOI

• Comment on "Computational Model for Predicting Experimental RNA and DNA Nearest-Neighbor Free Energy Rankings"

  ŠPONER Jiří MORGADO Claudio A SVOZIL Daniel

  Article in Periodical

  Journal of Physical Chemistry B, year: 2012, volume: 116, edition: 28, DOI

• Formamide-Based Prebiotic Synthesis of Nucleobases: A Kinetically Accessible Reaction Route

  ŠPONEROVÁ Judit MLÁDEK Arnošt ŠPONER Jiří FUENTES-CABRERA Miguel

  Article in Periodical

  The Journal of Physical Chemistry A, year: 2012, volume: 116, edition: 1, DOI

• How does hydroxyl introduction influence the double helical structure: the stabilization of an altritol nucleic acid: ribonucleic acid duplex

  OVAERE Margriet ŠPONER Jiří ŠPONEROVÁ Judit HERDEWIJN Piet VAN MEERVELT Luc

  Article in Periodical

  Nucleic Acids Research, year: 2012, volume: 40, edition: 15, DOI